STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ITGB4Integrin subunit beta 4. (1768 aa)    
Predicted Functional Partners:
ITGA6
Integrin subunit alpha 6.
   
 0.981
ITGA3
Integrin subunit alpha 3.
   
 0.975
ITGAV
Integrin subunit alpha V.
   
 0.969
ITGA4
Integrin subunit alpha 4.
   
 0.966
ITGA1
Integrin subunit alpha 1.
   
 0.961
ITGA9
Integrin subunit alpha 9.
   
 0.958
LAMC2
Laminin subunit gamma 2.
   
 0.943
LAMB3
Laminin subunit beta 3.
   
 0.943
ENSCPUP00000004213
annotation not available
    
  0.930
ITGB3
Integrin subunit beta 3.
   
 
0.928
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.