STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D10ATBC1 domain family member 10A. (492 aa)    
Predicted Functional Partners:
RAB35
RAB35, member RAS oncogene family.
   
 0.872
ARF6
ADP ribosylation factor 6.
     
 0.809
IFT27
Intraflagellar transport 27.
   
 0.735
ARL15
ADP ribosylation factor like GTPase 15.
     
 0.626
TBC1D13
TBC1 domain family member 13.
      
 0.560
DDX3X
DEAD-box helicase 3 X-linked.
   
 
  0.529
IL31RA
Interleukin 31 receptor A.
   
 
  0.529
DDX4
DEAD-box helicase 4.
   
 
  0.529
TBC1D22B
TBC1 domain family member 22B.
      
 0.505
SLC9A3R1
SLC9A3 regulator 1.
    
 
 0.460
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.