STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C12orf10Chromosome unknown open reading frame, human C12orf10. (365 aa)    
Predicted Functional Partners:
NDUFS8
NADH:ubiquinone oxidoreductase core subunit S8.
   
    0.799
NDUFS2
NADH:ubiquinone oxidoreductase core subunit S2.
   
    0.787
NDUFS1
NADH:ubiquinone oxidoreductase core subunit S1.
   
    0.786
SDHA
Succinate dehydrogenase complex flavoprotein subunit A.
   
    0.692
SDHC
Succinate dehydrogenase complex subunit C.
   
    0.692
C11orf49
Chromosome unknown open reading frame, human C11orf49.
      
 0.547
DOHH
Deoxyhypusine hydroxylase.
  
 
 0.540
NIP7
Nucleolar pre-rRNA processing protein NIP7.
   
    0.537
MFSD5
Major facilitator superfamily domain containing 5.
   
  
 0.529
MRTO4
MRT4 homolog, ribosome maturation factor.
  
    0.461
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.