STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQRAquarius intron-binding spliceosomal factor. (1466 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
   
 0.999
PRPF19
pre-mRNA processing factor 19.
    
 0.999
CDC5L
Cell division cycle 5 like.
   
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
 0.998
CDC40
Cell division cycle 40.
   
 0.998
RBM22
RNA binding motif protein 22.
    
 0.997
BUD31
BUD31 homolog.
    
  0.997
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.997
PPIE
Peptidylprolyl isomerase E.
    
 0.997
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.