STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IFIH1Interferon induced with helicase C domain 1. (1028 aa)    
Predicted Functional Partners:
MAVS
Mitochondrial antiviral signaling protein.
    
 0.984
DHX58
DExH-box helicase 58.
  
0.941
OASL
2'-5'-oligoadenylate synthase 1-like.
   
 0.890
TOP3A
DNA topoisomerase III alpha.
   
 0.851
FANCL
FA complementation group L.
    
 0.839
FANCG
FA complementation group G.
    
 0.838
FAAP24
FA core complex associated protein 24.
    
 0.834
WRN
WRN RecQ like helicase.
   
 0.833
FANCF
FA complementation group F.
    
 0.831
TKFC
Triokinase and FMN cyclase.
    
 0.828
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.