STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIGNFidgetin, microtubule severing factor. (757 aa)    
Predicted Functional Partners:
UBXN7
UBX domain protein 7.
   
 0.991
IST1
IST1 factor associated with ESCRT-III.
    
 0.864
LOC106902937
Charged multivesicular body protein 3.
   
 0.827
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.795
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.758
YOD1
YOD1 deubiquitinase.
   
 0.754
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 0.732
FAAP100
FA core complex associated protein 100.
    
 0.732
NAPB
NSF attachment protein beta.
    
 0.728
NAPA
NSF attachment protein alpha.
    
 0.728
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.