STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106893511Zinc finger protein 721-like. (823 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.766
TRIM33
Tripartite motif containing 33.
    
 0.609
TRIM28
Tripartite motif containing 28.
    
 0.609
MYSM1
Histone H2A deubiquitinase MYSM1.
    
  0.599
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.564
SUFU
SUFU negative regulator of hedgehog signaling.
   
 0.543
MRPS10
Mitochondrial ribosomal protein S10.
   
  0.534
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.533
CHCHD1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
   
  0.531
KDM6A
Lysine demethylase 6A.
    
 0.530
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.