STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3AMicrotubule associated protein 1 light chain 3 alpha. (191 aa)    
Predicted Functional Partners:
NBR1
NBR1 autophagy cargo receptor.
   
 0.998
SQSTM1
Sequestosome 1.
   
 0.934
ATG7
Autophagy related 7.
   
 0.933
ATG3
Autophagy related 3.
   
 0.930
FUNDC1
FUN14 domain containing 1.
    
 0.909
ATG4B
Autophagy related 4B cysteine peptidase.
   
 0.899
ATG14
Autophagy related 14.
   
 0.887
ATG4A
Autophagy related 4A cysteine peptidase.
   
 0.886
ATG12
Autophagy related 12.
   
 0.867
GABARAPL2
GABA type A receptor associated protein like 2.
  
0.867
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.