STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPR88G protein-coupled receptor 88. (350 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.762
VCAM1
Vascular cell adhesion molecule 1.
 
  
 
 0.660
GNB1
G protein subunit beta 1.
    
  0.642
GNB4
G protein subunit beta 4.
    
  0.642
GNB3
G protein subunit beta 3.
    
  0.596
GNAI2
G protein subunit alpha i2.
   
  0.555
GNAO1
G protein subunit alpha o1.
   
  0.555
GNAI1
Guanine nucleotide-binding protein G(i) subunit alpha-1.
   
  0.555
GNAI3
Guanine nucleotide-binding protein G(k) subunit alpha-like.
   
  0.555
GNB5
G protein subunit beta 5.
    
  0.533
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.