STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIPSNAP2Nipsnap homolog 2. (264 aa)    
Predicted Functional Partners:
MTHFSD
Methenyltetrahydrofolate synthetase domain containing.
   
    0.790
SMIM12
Small integral membrane protein 12.
   
  
 0.691
SNU13
Small nuclear ribonucleoprotein 13.
   
    0.674
ASF1A
Anti-silencing function 1A histone chaperone.
   
    0.674
NOP56
NOP56 ribonucleoprotein.
   
    0.673
UTP15
UTP15 small subunit processome component.
   
    0.673
PSMD1
Proteasome 26S subunit, non-ATPase 1.
   
    0.673
WDR6
WD repeat domain 6.
   
    0.673
LAMTOR1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
   
  0.639
RAB40B
RAB40B, member RAS oncogene family.
   
 
  0.602
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.