STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOMM70Translocase of outer mitochondrial membrane 70. (589 aa)    
Predicted Functional Partners:
TOMM20
Translocase of outer mitochondrial membrane 20.
   
 0.997
TOMM40L
Translocase of outer mitochondrial membrane 40 like.
    
 0.994
TOMM22
Translocase of outer mitochondrial membrane 22.
   
 0.986
TOMM7
Translocase of outer mitochondrial membrane 7.
    
 0.981
SAMM50
SAMM50 sorting and assembly machinery component.
   
 0.972
ENSCPUP00000028922
annotation not available
   
 0.962
ANKZF1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
     
 0.912
MTX3
Metaxin 3.
    
 0.882
MTX1
Metaxin 1.
    
 0.882
FUT8
Fucosyltransferase 8.
     
 0.865
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.