STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL8A1Collagen type VIII alpha 1 chain. (738 aa)    
Predicted Functional Partners:
ENSCPUP00000007775
annotation not available
 
  
 0.932
ENSCPUP00000014314
annotation not available
 
  
 0.904
ENSCPUP00000016672
annotation not available
 
   
 0.857
ENSCPUP00000004496
annotation not available
 
 
 
 0.856
ENSCPUP00000004670
annotation not available
 
   
 0.838
ENSCPUP00000000773
annotation not available
    
  0.808
ENSCPUP00000020902
annotation not available
 
  
 0.786
ENSCPUP00000016666
annotation not available
 
   
 0.767
ENSCPUP00000013555
annotation not available
 
 
  0.759
COL6A2
Collagen type VI alpha 2 chain.
  
0.698
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.