STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXD9Homeobox D9. (300 aa)    
Predicted Functional Partners:
HOXC10
Homeobox C10.
   
  
0.690
HOXD10
Homeobox D10.
   
  
0.690
HOXD3
Homeobox D3.
   
 
0.581
HOXD4
Homeobox D4.
   
 
0.561
PBX4
PBX homeobox 4.
    
 
 0.519
PBX3
PBX homeobox 3.
    
 
 0.519
PBX1
PBX homeobox 1.
    
 
 0.519
HOXC4
Homeobox C4.
 
 
 
0.506
EVX2
Even-skipped homeobox 2.
   
 
 0.486
HOXC8
Homeobox C8.
   
 
0.484
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.