STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC38A1Solute carrier family 38 member 1. (489 aa)    
Predicted Functional Partners:
TRPM2
Transient receptor potential cation channel subfamily M member 2.
     
 0.722
LAMTOR2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
 0.675
RRAGB
Ras-related GTP-binding protein A.
   
 0.673
LAMTOR1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
    
 0.669
ENSCPUP00000006691
annotation not available
    
 0.664
LAMTOR5
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.
    
 0.661
IL4
Interleukin 4.
   
 0.646
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.612
RRAGD
Ras related GTP binding D.
    
 0.609
RRAGC
Ras related GTP binding C.
    
 0.609
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.