STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000007259annotation not available (78 aa)    
Predicted Functional Partners:
TFDP1
Transcription factor Dp-1.
  
 0.954
TFDP2
Transcription factor Dp-2.
  
 0.954
RB1
RB transcriptional corepressor 1.
   
 0.953
RBL2
RB transcriptional corepressor like 2.
   
 0.940
RBL1
RB transcriptional corepressor like 1.
   
 0.940
E2F3
E2F transcription factor 3.
 
      0.900
E2F4
E2F transcription factor 4.
  
 
0.889
CCNA2
Cyclin A2.
    
 0.883
CCNA1
Cyclin A1.
    
 0.883
E2F1
E2F transcription factor 1.
  
 
0.875
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.