STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LONRF2LON peptidase N-terminal domain and ring finger 2. (446 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
  0.764
ENSCPUP00000011075
annotation not available
    
 0.709
TP53BP1
Tumor protein p53 binding protein 1.
    
 0.664
ENSCPUP00000003594
annotation not available
    
 0.661
TRIP12
Thyroid hormone receptor interactor 12.
    
 0.640
PAXIP1
PAX interacting protein 1.
    
 0.620
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.610
BRCA1
BRCA1 DNA repair associated.
    
 0.602
OASL
2'-5'-oligoadenylate synthase 1-like.
    
  0.592
LOC106900028
polyubiquitin-B.
    
  0.592
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.