STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG7Autophagy related 7. (709 aa)    
Predicted Functional Partners:
ATG3
Autophagy related 3.
    
 0.999
ATG12
Autophagy related 12.
    
 0.998
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.994
LOC106886819
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.992
BIRC6
Baculoviral IAP repeat containing 6.
  
 0.983
TRIP12
Thyroid hormone receptor interactor 12.
    
 0.976
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.969
ATG5
Autophagy related 5.
    
 0.956
ATG10
Autophagy related 10.
   
 0.939
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.933
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.