STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2SURPU2 snRNP associated SURP domain containing. (1001 aa)    
Predicted Functional Partners:
RBM17
RNA binding motif protein 17.
   
 0.997
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.993
DHX15
DEAH-box helicase 15.
   
 0.982
DDX46
DEAD-box helicase 46.
   
 0.976
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
  0.968
SMNDC1
Survival motor neuron domain containing 1.
    
  0.965
PUF60
poly(U) binding splicing factor 60.
   
 0.964
PHF5A
PHD finger protein 5A.
   
  0.955
SF3A2
Splicing factor 3a subunit 2.
    
 0.932
SF3B1
Splicing factor 3b subunit 1.
   
 0.915
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.