STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEX5Peroxisomal biogenesis factor 5. (645 aa)    
Predicted Functional Partners:
SCP2
Sterol carrier protein 2.
   
 0.999
PEX14
Peroxisomal biogenesis factor 14.
   
 0.996
HSDL2
Hydroxysteroid dehydrogenase like 2.
   
 0.990
NBR1
NBR1 autophagy cargo receptor.
    
 0.987
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
    
 0.983
ECI2
enoyl-CoA delta isomerase 2.
   
 0.981
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.977
EPHX2
Epoxide hydrolase 2.
   
 0.973
PEX13
Peroxisomal biogenesis factor 13.
   
 0.972
PEX12
Peroxisomal biogenesis factor 12.
   
 0.969
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.