STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP5Ubiquitin specific peptidase 5. (810 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
 0.983
ENSCPUP00000011075
annotation not available
    
 0.982
BECN1
Beclin 1.
     
 0.955
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.923
OASL
2'-5'-oligoadenylate synthase 1-like.
    
 0.922
LOC106900028
polyubiquitin-B.
    
 0.922
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.907
UBQLN4
Ubiquilin 4.
   
 0.876
UBQLN1
Ubiquilin 1.
   
 0.867
UBL7
Ubiquitin like 7.
   
 0.865
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.