STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WARS2Tryptophanyl tRNA synthetase 2, mitochondrial. (329 aa)    
Predicted Functional Partners:
WARS1
tryptophanyl-tRNA synthetase 1.
     
 0.932
YARS1
tyrosyl-tRNA synthetase 1.
  
 
 0.822
SARS1
seryl-tRNA synthetase 1.
  
 
 0.814
MRPS10
Mitochondrial ribosomal protein S10.
  
 
 0.768
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.760
LARS2
leucyl-tRNA synthetase 2, mitochondrial.
  
 
 0.752
LARS1
leucyl-tRNA synthetase 1.
  
 
 0.752
RARS2
arginyl-tRNA synthetase 2, mitochondrial.
  
  
 0.744
RARS1
arginyl-tRNA synthetase 1.
  
  
 0.743
IARS1
isoleucyl-tRNA synthetase 1.
  
 
 0.727
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.