STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000008384annotation not available (161 aa)    
Predicted Functional Partners:
BLOC1S2
Biogenesis of lysosomal organelles complex 1 subunit 2.
     
 0.673
SUMO1
Small ubiquitin like modifier 1.
    
 0.669
UBE2I
Ubiquitin conjugating enzyme E2 I.
    
 0.655
KCTD2
Potassium channel tetramerization domain containing 2.
    
 0.560
ENSCPUP00000003340
annotation not available
    
 0.525
SUMO3
Small ubiquitin-related modifier 3.
    
 0.525
TOP1
DNA topoisomerase I.
   
 
 0.496
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
    
  0.459
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
  0.459
UBE2D3
Ubiquitin conjugating enzyme E2 D3.
    
  0.459
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.