STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITPNBPhosphatidylinositol transfer protein beta. (90 aa)    
Predicted Functional Partners:
DOLK
Dolichol kinase.
    
 0.651
SOAT1
Sterol O-acyltransferase 1.
    
 0.586
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
    
 0.582
CTDSP1
CTD small phosphatase 1.
    
 0.581
CTDP1
CTD phosphatase subunit 1.
    
 0.581
ENSCPUP00000009852
annotation not available
    
 0.581
CTDSPL2
CTD small phosphatase like 2.
    
 0.581
CTDSPL
CTD small phosphatase like.
    
 0.581
VAPA
VAMP associated protein A.
    
 
 0.537
PLA2G15
Phospholipase A2 group XV.
    
 0.523
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.