STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOXThymocyte selection associated high mobility group box. (539 aa)    
Predicted Functional Partners:
WDR82
WD repeat domain 82.
    
 0.865
PPP1CB
Protein phosphatase 1 catalytic subunit beta.
   
 0.837
PPP1CA
Protein phosphatase 1 catalytic subunit alpha.
   
  0.773
PPP1CC
Protein phosphatase 1 catalytic subunit gamma.
   
  0.773
ACTR8
Actin related protein 8.
    
 0.748
GTF2H1
General transcription factor IIH subunit 1.
    
 0.726
POLRMT
RNA polymerase mitochondrial.
    
 0.724
RUVBL2
ruvB-like 2.
   
 0.717
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.706
H2AZ2
H2A.Z variant histone 2.
   
 0.690
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.