RNMT protein (Calidris pugnax) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNMT

RNA guanine-7 methyltransferase. (414 aa)

Predicted Functional Partners:

SUPT5H

0.984

RNGTT

0.983

RAMAC

0.982

EIF4E2

0.952

NCBP1

0.943

POLR2C

0.943

SCAF4

0.939

SCAF8

0.939

POLR2B

0.907

POLR2H

0.869

Your Current Organism:

Calidris pugnax

NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4E2	NCBP1	ENSCPUP00000025255	ENSCPUP00000001580	Eukaryotic translation initiation factor 4E family member 2.	Nuclear cap binding protein subunit 1.	0.926
EIF4E2	RNMT	ENSCPUP00000025255	ENSCPUP00000009292	Eukaryotic translation initiation factor 4E family member 2.	RNA guanine-7 methyltransferase.	0.952
NCBP1	EIF4E2	ENSCPUP00000001580	ENSCPUP00000025255	Nuclear cap binding protein subunit 1.	Eukaryotic translation initiation factor 4E family member 2.	0.926
NCBP1	POLR2B	ENSCPUP00000001580	ENSCPUP00000013891	Nuclear cap binding protein subunit 1.	RNA polymerase II subunit B.	0.773
NCBP1	POLR2C	ENSCPUP00000001580	ENSCPUP00000015017	Nuclear cap binding protein subunit 1.	RNA polymerase II subunit C.	0.714
NCBP1	RNGTT	ENSCPUP00000001580	ENSCPUP00000014023	Nuclear cap binding protein subunit 1.	RNA guanylyltransferase and 5'-phosphatase.	0.762
NCBP1	RNMT	ENSCPUP00000001580	ENSCPUP00000009292	Nuclear cap binding protein subunit 1.	RNA guanine-7 methyltransferase.	0.943
NCBP1	SCAF4	ENSCPUP00000001580	ENSCPUP00000018447	Nuclear cap binding protein subunit 1.	SR-related CTD associated factor 4.	0.930
NCBP1	SCAF8	ENSCPUP00000001580	ENSCPUP00000021159	Nuclear cap binding protein subunit 1.	SR-related CTD associated factor 8.	0.934
NCBP1	SUPT5H	ENSCPUP00000001580	ENSCPUP00000010371	Nuclear cap binding protein subunit 1.	SPT5 homolog, DSIF elongation factor subunit.	0.760
POLR2B	NCBP1	ENSCPUP00000013891	ENSCPUP00000001580	RNA polymerase II subunit B.	Nuclear cap binding protein subunit 1.	0.773
POLR2B	POLR2C	ENSCPUP00000013891	ENSCPUP00000015017	RNA polymerase II subunit B.	RNA polymerase II subunit C.	0.999
POLR2B	POLR2H	ENSCPUP00000013891	ENSCPUP00000020208	RNA polymerase II subunit B.	RNA polymerase II subunit H.	0.999
POLR2B	RNGTT	ENSCPUP00000013891	ENSCPUP00000014023	RNA polymerase II subunit B.	RNA guanylyltransferase and 5'-phosphatase.	0.762
POLR2B	RNMT	ENSCPUP00000013891	ENSCPUP00000009292	RNA polymerase II subunit B.	RNA guanine-7 methyltransferase.	0.907
POLR2B	SCAF4	ENSCPUP00000013891	ENSCPUP00000018447	RNA polymerase II subunit B.	SR-related CTD associated factor 4.	0.685
POLR2B	SCAF8	ENSCPUP00000013891	ENSCPUP00000021159	RNA polymerase II subunit B.	SR-related CTD associated factor 8.	0.699
POLR2B	SUPT5H	ENSCPUP00000013891	ENSCPUP00000010371	RNA polymerase II subunit B.	SPT5 homolog, DSIF elongation factor subunit.	0.998
POLR2C	NCBP1	ENSCPUP00000015017	ENSCPUP00000001580	RNA polymerase II subunit C.	Nuclear cap binding protein subunit 1.	0.714
POLR2C	POLR2B	ENSCPUP00000015017	ENSCPUP00000013891	RNA polymerase II subunit C.	RNA polymerase II subunit B.	0.999