STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106895716Transmembrane 9 superfamily member 2-like. (646 aa)    
Predicted Functional Partners:
TMED10
Transmembrane p24 trafficking protein 10.
   
  
 0.808
ENSCPUP00000016324
annotation not available
   
    0.549
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
   
  
 0.442
VPS54
VPS54 subunit of GARP complex.
      
 0.435
LOC106897659
Phosphatidate phosphatase PPAPDC1B-like.
    
   0.412
ENSCPUP00000008303
annotation not available
    
   0.412
PLPP4
Phospholipid phosphatase 4.
    
   0.412
UGP2
UDP-glucose pyrophosphorylase 2.
      
 0.410
FAM234B
Family with sequence similarity 234 member B.
      
 0.405
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.