STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMA16Translation machinery associated 16 homolog. (195 aa)    
Predicted Functional Partners:
GTPBP4
GTP binding protein 4.
   
 
 0.946
RSL24D1
Ribosomal L24 domain containing 1.
   
 
 0.919
GNL2
G protein nucleolar 2.
   
 
 0.859
ZNF593
Zinc finger protein 593.
   
 
 0.847
RPF2
Ribosome production factor 2 homolog.
   
  
 0.846
RRS1
Ribosome biogenesis regulator 1 homolog.
   
    0.838
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
    0.828
SDAD1
SDA1 domain containing 1.
   
   0.821
POLR1D
DNA-directed RNA polymerases I and III subunit RPAC2-like.
   
    0.820
NMD3
NMD3 ribosome export adaptor.
   
 
 0.817
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.