STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHC1Polyhomeotic homolog 1. (995 aa)    
Predicted Functional Partners:
CBX8
Chromobox 8.
    
 0.944
CBX7
Chromobox 7.
    
 0.931
CBX2
Chromobox 2.
    
 0.930
CBX4
Chromobox 4.
    
 0.909
CBX6
Chromobox 6.
    
 0.904
PCGF6
Polycomb group ring finger 6.
    
 0.860
LOC106890667
Polycomb complex protein BMI-1.
    
 0.855
PCGF2
Polycomb group ring finger 2.
    
 0.855
RING1
Ring finger protein 1.
    
 0.852
RNF2
Ring finger protein 2.
    
 0.852
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.