STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNFSF13BTNF superfamily member 13b. (288 aa)    
Predicted Functional Partners:
TNFRSF13C
TNF receptor superfamily member 13C.
    
 0.996
TNFRSF17
TNF receptor superfamily member 17.
    
 0.996
TNFRSF13B
TNF receptor superfamily member 13B.
    
 0.975
CD40LG
CD40 ligand.
   
 
 0.812
TNFSF11
TNF superfamily member 11.
   
 0.797
TRAF3
TNF receptor associated factor 3.
   
 0.778
TRAF5
TNF receptor associated factor 5.
   
 0.711
CD40
CD40 molecule.
   
 0.711
LOC106900064
Interleukin-1 receptor type 1-like.
  
 0.696
MAP3K14
Mitogen-activated protein kinase kinase kinase 14.
     
 0.686
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.