STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1Transcription elongation regulator 1. (994 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.983
DDX46
DEAD-box helicase 46.
   
 0.982
SF3A1
Splicing factor 3a subunit 1.
   
  0.981
MFAP1
Microfibril associated protein 1.
   
 0.980
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.977
ENSCPUP00000023645
annotation not available
    
  0.976
PRPF38A
pre-mRNA processing factor 38A.
   
 0.974
SF3A2
Splicing factor 3a subunit 2.
    
 0.972
ZMAT2
Zinc finger matrin-type 2.
    
  0.966
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
 0.964
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.