STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2BE1Late histone H2B.L4-like. (126 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.890
KDM6A
Lysine demethylase 6A.
    
 0.860
MACROH2A1
Core histone macro-H2A.1.
 
 
 0.814
MACROH2A2
Core histone macro-H2A.2.
 
 
 0.814
LOC106901055
Histone H3.
 
 
 0.810
LOC106901056
Histone H3.
 
 
 0.810
H3F3B
H3 histone, family 3B.
 
 
 0.809
H3F3A
H3 histone, family 3A.
 
 
 0.809
LOC106892405
Histone H2A.
 
 0.796
ENSCPUP00000025072
annotation not available
 
 0.793
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.