STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD22-oxoglutarate and iron dependent oxygenase domain containing 2. (349 aa)    
Predicted Functional Partners:
PRDM5
PR/SET domain 5.
     
 0.796
PRDM4
PR/SET domain 4.
     
 0.796
KMT5A
Lysine methyltransferase 5A.
    
 0.735
ENSCPUP00000012263
annotation not available
   
 0.621
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
   
 0.621
CERCAM
Cerebral endothelial cell adhesion molecule.
   
 0.621
MOSMO
Modulator of smoothened.
   
 0.621
SETD1B
SET domain containing 1B, histone lysine methyltransferase.
    
  0.574
SUV39H1
Suppressor of variegation 3-9 homolog 1.
    
  0.574
SETDB1
Histone-lysine N-methyltransferase SETDB1-like.
    
  0.574
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.