STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRPL13Mitochondrial ribosomal protein L13. (230 aa)    
Predicted Functional Partners:
PDCD11
Programmed cell death 11.
  
 0.999
RPL36AL
Ribosomal protein L36a like.
   
 0.999
MRPL22
Mitochondrial ribosomal protein L22.
  
 0.999
MRPL12
Mitochondrial ribosomal protein L12.
  
 
 0.999
RPL34
Ribosomal protein L34.
  
 0.999
RPS28
Ribosomal protein S28.
  
 0.999
ENSCPUP00000002090
annotation not available
  
 
 0.999
ENSCPUP00000002191
annotation not available
  
 0.999
RPS3
Ribosomal protein S3.
  
 0.999
RPS8
Ribosomal protein S8.
   
 0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.