STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000011272annotation not available (181 aa)    
Predicted Functional Partners:
RPS3
Ribosomal protein S3.
   
 0.998
RPSA
Ribosomal protein SA.
   
 0.997
RPS28
Ribosomal protein S28.
   
 0.997
RPS8
Ribosomal protein S8.
   
 0.997
RPS16
Ribosomal protein S16.
   
 0.997
RPS7
Ribosomal protein S7.
   
 0.997
RPS5
Ribosomal protein S5.
   
 0.997
RPS3A
Ribosomal protein S3A.
   
 0.997
RPS2
40S ribosomal protein S2.
   
 0.997
RPS12
Ribosomal protein S12.
   
 0.997
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.