STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDF1Endothelial differentiation related factor 1. (148 aa)    
Predicted Functional Partners:
ENSCPUP00000019093
annotation not available
   
 
 0.969
RPS3
Ribosomal protein S3.
  
 
 0.961
RPL35
Ribosomal protein L35.
  
 
 0.958
RPS21
Ribosomal protein S21.
   
 
 0.957
ENSCPUP00000009726
annotation not available
   
 
 0.955
RPS18
Ribosomal protein S18.
   
 
 0.955
RPS10
Ribosomal protein S10.
   
 
 0.954
RPS16
Ribosomal protein S16.
  
 
 0.953
RPS5
Ribosomal protein S5.
   
   0.953
RPS3A
Ribosomal protein S3A.
   
 
 0.952
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.