STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS1Pseudouridine synthase 1. (434 aa)    
Predicted Functional Partners:
WDR4
WD repeat domain 4.
   
 
 0.940
DKC1
H/ACA ribonucleoprotein complex subunit 4.
  
 0.917
TRUB1
TruB pseudouridine synthase family member 1.
  
 0.904
DUS3L
Dihydrouridine synthase 3 like.
  
 
 0.870
MRPL17
Mitochondrial ribosomal protein L17.
  
  
 0.870
TRUB2
TruB pseudouridine synthase family member 2.
  
 0.848
WDR12
WD repeat domain 12.
   
   0.817
DDX18
DEAD-box helicase 18.
  
  
 0.805
POLR1C
RNA polymerase I and III subunit C.
  
  
 0.787
POLR2C
RNA polymerase II subunit C.
  
  
 0.787
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.