STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTSHCathepsin H. (319 aa)    
Predicted Functional Partners:
CTSB
Cathepsin B.
  
0.909
CTSL
Cathepsin L.
  
 
0.884
CTSZ
Cathepsin Z.
   
0.873
CTSO
Cathepsin O.
  
0.857
CTSD
Cathepsin D.
   
 0.844
BID
BH3 interacting domain death agonist.
   
 
 0.842
LOC106900940
Cathepsin E-A-like.
   
 0.840
BCL2
BCL2 apoptosis regulator.
   
 
 0.840
BIRC2
Baculoviral IAP repeat containing 2.
     
 0.839
XIAP
X-linked inhibitor of apoptosis.
     
 0.839
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.