STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106896192Uncharacterized LOC106896192. (430 aa)    
Predicted Functional Partners:
PTK7
Protein tyrosine kinase 7 (inactive).
    
 0.560
CD47
CD47 molecule.
    
  0.536
NECTIN3
Nectin cell adhesion molecule 3.
    
  0.531
NECTIN1
Nectin cell adhesion molecule 1.
    
  0.531
BNIP5
BCL2 interacting protein 5.
  
 
   0.510
MRE11
MRE11 homolog, double strand break repair nuclease.
    
 0.500
RAD50
RAD50 double strand break repair protein.
    
  0.493
RIPK4
Receptor interacting serine/threonine kinase 4.
    
  0.493
RNASEL
Ribonuclease L.
    
  0.493
PIDD1
P53-induced death domain protein 1.
    
  0.489
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.