STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106896179Krueppel-like factor 5. (451 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.766
WWP1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.735
EP300
E1A binding protein p300.
    
 0.697
CEBPB
CCAAT enhancer binding protein beta.
    
 0.669
MYSM1
Histone H2A deubiquitinase MYSM1.
    
  0.599
WWP2
WW domain containing E3 ubiquitin protein ligase 2.
    
 0.597
PPARG
Peroxisome proliferator activated receptor gamma.
    
 0.575
CEBPA
CCAAT enhancer binding protein alpha.
    
 0.568
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.564
CREBBP
CREB binding protein.
    
 0.551
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.