STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TDRKHMitochondrial ribosomal protein L9. (497 aa)    
Predicted Functional Partners:
PIWIL1
Piwi like RNA-mediated gene silencing 1.
   
 0.860
PIWIL2
Piwi like RNA-mediated gene silencing 2.
   
 0.828
TDRD9
Tudor domain containing 9.
    
 0.721
SND1
Staphylococcal nuclease and tudor domain containing 1.
   
 0.679
PRKACB
Protein kinase cAMP-activated catalytic subunit beta.
    
 0.675
PRKX
Protein kinase X-linked.
    
 0.675
THAP1
THAP domain containing 1.
    
 0.675
ENSCPUP00000027575
annotation not available
    
 0.675
ENSCPUP00000011108
annotation not available
    
 0.647
PRKAR2B
Protein kinase cAMP-dependent type II regulatory subunit beta.
    
 0.647
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.