STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000012044annotation not available (96 aa)    
Predicted Functional Partners:
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 0.836
GOT1
Glutamic-oxaloacetic transaminase 1.
  
 0.831
GOT2
Glutamic-oxaloacetic transaminase 2.
  
 0.828
AGXT2
Alanine--glyoxylate aminotransferase 2.
  
 0.784
FH
Fumarate hydratase.
  
 0.776
IDH1
Isocitrate dehydrogenase (NADP(+)) 1.
  
 
 0.756
IDH2
Isocitrate dehydrogenase (NADP(+)) 2.
  
 
 0.756
SDHA
Succinate dehydrogenase complex flavoprotein subunit A.
   
 
 0.747
IDH3A
Isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha.
  
 
 0.738
IDH3B
Isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta.
  
 
 0.732
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.