STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADAMTS18ADAM metallopeptidase with thrombospondin type 1 motif 18. (1227 aa)    
Predicted Functional Partners:
B3GLCT
Beta 3-glucosyltransferase.
    
 0.685
SALL4
Spalt like transcription factor 4.
   
  
 0.628
HIVEP3
HIVEP zinc finger 3.
      
 0.610
USH1C
USH1 protein network component harmonin.
      
 0.606
IRX3
Iroquois homeobox 3.
      
 0.598
POFUT2
Protein O-fucosyltransferase 2.
     
 0.577
USH2A
Usherin.
    
 
 0.537
ARID4B
AT-rich interaction domain 4B.
    
 
 0.536
SELENOS
Selenoprotein S.
      
 0.523
CCDC51
Coiled-coil domain containing 51.
      
 0.485
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.