STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATRAIDAll-trans retinoic acid induced differentiation factor. (204 aa)    
Predicted Functional Partners:
SLC37A3
Solute carrier family 37 member 3.
    
 
 0.568
MYSM1
Histone H2A deubiquitinase MYSM1.
   
  
 0.511
FNDC4
Fibronectin type III domain containing 4.
      
 0.438
SUMF2
Sulfatase modifying factor 2.
      
 0.437
MXRA7
Matrix remodeling associated 7.
      
 0.424
SNX17
Sorting nexin 17.
   
  
 0.408
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.