STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000012150annotation not available (342 aa)    
Predicted Functional Partners:
TNFRSF1A
TNF receptor superfamily member 1A.
    
 0.983
OTULIN
OTU deubiquitinase with linear linkage specificity.
    
 0.983
RIPK1
Receptor interacting serine/threonine kinase 1.
    
 0.924
BIRC2
Baculoviral IAP repeat containing 2.
    
 0.890
TRAF5
TNF receptor associated factor 5.
    
 0.886
TRAF2
TNF receptor associated factor 2.
    
 0.870
XIAP
X-linked inhibitor of apoptosis.
    
 0.858
TRAF1
TNF receptor associated factor 1.
    
 0.858
TRAF3
TNF receptor associated factor 3.
    
 0.851
LOC106888111
Uncharacterized LOC106888111.
    
  0.848
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.