STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAT1LVesicle amine transport 1 like. (355 aa)    
Predicted Functional Partners:
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.881
FASN
Fatty acid synthase.
  
0.804
KATNAL2
Katanin catalytic subunit A1 like 2.
   
 0.740
WWOX
WW domain containing oxidoreductase.
  
 0.704
ADHFE1
Alcohol dehydrogenase iron containing 1.
    
 0.688
ATP5F1D
ATP synthase F1 subunit delta.
    
 0.642
ALDH5A1
Aldehyde dehydrogenase 5 family member A1.
   
 0.630
SORD
Sorbitol dehydrogenase.
  
 
 0.622
SCP2
Sterol carrier protein 2.
  
 0.622
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
   
 0.622
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.