STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD7Chromodomain helicase DNA binding protein 7. (3020 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.931
RUVBL1
RuvB like AAA ATPase 1.
    
 0.776
RUVBL2
ruvB-like 2.
    
 0.771
DDX6
DEAD-box helicase 6.
  
 0.756
ARID4B
AT-rich interaction domain 4B.
   
 0.739
ARID4A
AT-rich interaction domain 4A.
   
 0.735
DPY30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
  0.727
FANCM
FA complementation group M.
    
 0.725
MPHOSPH8
M-phase phosphoprotein 8.
    
 0.717
INO80C
INO80 complex subunit C.
    
 0.713
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.