STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSMCE2NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase. (253 aa)    
Predicted Functional Partners:
SMC6
Structural maintenance of chromosomes 6.
    
 0.999
SMC5
Structural maintenance of chromosomes 5.
    
 0.999
NSMCE1
NSE1 homolog, SMC5-SMC6 complex component.
    
 0.999
NSMCE4A
NSE4 homolog A, SMC5-SMC6 complex component.
    
 0.998
UBE2I
Ubiquitin conjugating enzyme E2 I.
   
 0.983
PRAM1
PML-RARA regulated adaptor molecule 1.
    
 0.980
ENSCPUP00000019550
annotation not available
    
 0.980
KCTD2
Potassium channel tetramerization domain containing 2.
   
 0.949
RANBP2
E3 SUMO-protein ligase RanBP2-like.
     
 0.940
RANGAP1
Ran GTPase activating protein 1.
     
 0.932
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.