STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GOPCGolgi associated PDZ and coiled-coil motif containing. (429 aa)    
Predicted Functional Partners:
CFTR
CF transmembrane conductance regulator.
   
 0.888
MAGI3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
    
 0.796
TTC26
Tetratricopeptide repeat domain 26.
    
 0.739
RHOJ
Ras homolog family member J.
    
 0.736
RHOQ
Ras homolog family member Q.
    
 0.736
PICK1
Protein interacting with PRKCA 1.
    
 0.694
IFT57
Intraflagellar transport 57.
    
 0.691
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.678
RHOH
Ras homolog family member H.
    
 0.676
IFT80
Intraflagellar transport 80.
    
 0.660
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.