STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ITGA10Integrin subunit alpha 10. (960 aa)    
Predicted Functional Partners:
ITGB3
Integrin subunit beta 3.
   
 0.876
ITGB1
Integrin subunit beta 1.
   
 0.867
ITGB5
Integrin subunit beta 5.
   
 0.861
ITGB8
Integrin subunit beta 8.
    
 0.850
ITGB6
Integrin subunit beta 6.
   
 0.838
ITGB2
Integrin subunit beta 2.
   
 0.825
PXN
Paxillin.
    
 0.821
ITGB4
Integrin subunit beta 4.
   
 0.819
TNR
Tenascin R.
    
 0.805
FREM1
FRAS1 related extracellular matrix 1.
   
 
  0.803
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.