STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000012610annotation not available (147 aa)    
Predicted Functional Partners:
GDI2
GDP dissociation inhibitor 2.
   
 0.754
C9orf72
C9orf72-SMCR8 complex subunit.
    
  0.742
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
     
 0.730
DYNC1LI2
Cytoplasmic dynein 1 light intermediate chain 2-like.
    
  0.728
DYNC1LI1
Dynein cytoplasmic 1 light intermediate chain 1.
    
  0.728
RAB3IL1
RAB3A interacting protein like 1.
    
 0.708
RAB3IP
RAB3A interacting protein.
    
 0.708
SQSTM1
Sequestosome 1.
    
 0.703
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
 0.701
CHM
CHM Rab escort protein.
    
 0.696
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.